OpenSystemsDevelopment / qpdf

It is possible to reproduce the failure with this file following the
instructions with oss-fuzz, though it does not cause a failure in CI.

The failure was introduced in
18c1ffe0df335a46cddbeb96e2cb939d850df9fa.

Remove variables obsoleted by commit 4f24617.

Update getJSON() methods and calls to them

Where not possible, use "auto" to get the iterator type.

Editorial note: I have avoid this change for a long time because of
not wanting to make gratuitous changes to version history, which can
obscure when certain changes were made, but with having recently
touched every single file to apply automatic code formatting and with
making several broad changes to the API, I decided it was time to take
the plunge and get rid of the older (pre-C++11) verbose iterator
syntax. The new code is just easier to read and understand, and in
many cases, it will be more effecient as fewer temporary copies are
being made.

m-holger, if you're reading, you can see that I've finally come
around. :-)

Increase to POINTERHOLDER_TRANSITION=3

patrepl s/PointerHolder/std::shared_ptr/g **/*.cc **/*.hh
patrepl s/make_pointer_holder/std::make_shared/g **/*.cc
patrepl s/make_array_pointer_holder/QUtil::make_shared_array/g **/*.cc
patrepl s,qpdf/std::shared_ptr,qpdf/PointerHolder, **/*.cc **/*.hh
git restore include/qpdf/PointerHolder.hh
git restore libtests/pointer_holder.cc
cleanpatch
./format-code

Run this:

for i in  **/*.cc **/*.c **/*.h **/*.hh; do
  clang-format < $i >| $i.new && mv $i.new $i
done

Files are copied into the build area rather than left in the source
tree, and the test suite looks for them there. Also remove special
case around counting files in the qpdf corpus.

This comment expands all tabs using an 8-character tab-width. You
should ignore this commit when using git blame or use git blame -w.

In the early days, I used to use tabs where possible for indentation,
since emacs did this automatically. In recent years, I have switched
to only using spaces, which means qpdf source code has been a mixture
of spaces and tabs. I have avoided cleaning this up because of not
wanting gratuitous whitespaces change to cloud the output of git
blame, but I changed my mind after discussing with users who view qpdf
source code in editors/IDEs that have other tab widths by default and
in light of the fact that I am planning to start applying automatic
code formatting soon.

Use get() and use_count() instead. Add #define
NO_POINTERHOLDER_DEPRECATION to remove deprecation markers for these
only.

This commit also removes all deprecated PointerHolder API calls from
qpdf's code except in PointerHolder's test suite, which must continue
to test the deprecated APIs.

Since the introduction of fuzz testing, there has never been a problem
found because of a failure of a file in the fuzzer seed corpus. As the
fuzzer has found problems, they have been added to the test suite, and
that should be adequate to exercise the fuzzers in the tesing
environment as well as providing adequate regression testing.

Removing these original files shaves many minutes off the builds in CI.

When making resources indirect in from_dr, the code was using the
wrong owning QPDF, forgetting that from_dr had already been copied
using CopyForeignObject.

The jpeg library has some assembly code that is missed by the compiler
instrumentation used by memory sanitization. There is a runtime
environment variable that is used to work around this issue.

There isn't really an issue with these files causing a real problem,
but malware and virus checkers trip on them, and the value to leaving
them in the test suite is too low to be worth the hassle.

I don't need qpdf's fuzz to find leaks and invalid memory in gnutls.