Working with stock mkdocs

Jordan Cheney
1 parent 74df0715
Showing 53 changed files with 264 additions and 73 deletions
docs/docs/api_docs/c_api/functions.md
docs/docs/api_docs/cl_api.md
docs/docs/api_docs/cpp_api/apifunctions.md
docs/docs/api_docs/cpp_api/classifier/functions.md
docs/docs/api_docs/cpp_api/classifier/statics.md
docs/docs/api_docs/cpp_api/compositetransform/properties.md
docs/docs/api_docs/cpp_api/context/functions.md
docs/docs/api_docs/cpp_api/context/members.md
docs/docs/api_docs/cpp_api/context/statics.md
docs/docs/api_docs/cpp_api/distance/distance.md
docs/docs/api_docs/cpp_api/distance/functions.md
docs/docs/api_docs/cpp_api/distance/statics.md
docs/docs/api_docs/cpp_api/factory/constructors.md
docs/docs/api_docs/cpp_api/factory/members.md
docs/docs/api_docs/cpp_api/factory/statics.md
docs/docs/api_docs/cpp_api/file/constructors.md
docs/docs/api_docs/cpp_api/file/file.md
docs/docs/api_docs/cpp_api/file/functions.md
docs/docs/api_docs/cpp_api/file/members.md
docs/docs/api_docs/cpp_api/file/statics.md
@@ -1391,3 +1391,7 @@ Close a provided [Gallery](../cpp_api/gallery/gallery.md).
 [^1]: *Zhu et al.*
     **A Rank-Order Distance based Clustering Algorithm for Face Tagging**,
     CVPR 2011
+
+<!-- Links -->
+[R]: http://www.r-project.org/ "R"
+[QRegExp]: http://doc.qt.io/qt-5/QRegExp.html "QRegExp"
@@ -375,3 +375,6 @@ Exit the application
         -exit
  
 * **wraps:** N/A
+
+<!-- Link -->
+[QRegExp]: http://doc.qt.io/qt-5/QRegExp.html "QRegExp"
@@ -283,3 +283,7 @@ Deduplicate a gallery. A duplicate is defined as an image with a match score abo
         File input("/path/to/input/galley/with/dups");
         File output("/path/to/output/gallery");
         Deduplicate(input, output, "0.7"); // Remove duplicates with match scores above 0.7
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
@@ -50,3 +50,7 @@ This is a pure virtual function. Classify a provided input image.
  
         classifier->classify(p1); // returns confidence > 0
         classifier->classify(n1); // returns confidence < 0
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -19,3 +19,7 @@ Make a [Classifier](classifier.md) from a string. The string is passed to [Facto
  
         Classifier *classifier = Classifier::make("Classifier(representation=Representation(property1=value1)");
         classifier->description(); // Returns "Classifier(representation=Representation(property1=value1))"
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
 Property | Type | Description
 --- | --- | ---
-transforms | [QList][QList]&lt;[Transform](../transform/transform.md)\*&gt; | List of child transforms
 \ No newline at end of file
+transforms | [QList][QList]&lt;[Transform](../transform/transform.md)\*&gt; | List of child transforms
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
@@ -81,3 +81,7 @@ Get the completion percentage of a call to [Train](../apifunctions.md#train), [E
  
 * **parameters:** NONE
 * **output:** (float) Returns the fraction of the currently running job that has been completed.
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QObject::property]: http://doc.qt.io/qt-5/qobject.html#property "QObject::property"
@@ -21,3 +21,13 @@ Member | Type | Description
 <a class="table-anchor" id=abbreviations></a>abbreviations | [QHash][QHash]&lt;[QString][QString], [QString][QString]&gt; | Used by [Transform](../transform/transform.md)::[make](../transform/statics.md#make) to expand abbreviated algorithms into their complete definitions.
 <a class="table-anchor" id=starttime></a>startTime | [QTime][QTime] | Used to estimate [timeRemaining](functions.md#timeremaining).
 <a class="table-anchor" id=logfile></a>logFile | [QFile][QFile] | Log file to write to.
+
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QHash]: http://doc.qt.io/qt-5/qhash.html "QHash"
+[QThread]: http://doc.qt.io/qt-5/qthread.html "QThread"
+[QByteArray]: http://doc.qt.io/qt-5/qbytearray.html "QByteArray"
+[QTime]: http://doc.qt.io/qt-5/QTime.html "QTime"
+[QFile]: http://doc.qt.io/qt-5/qfile.html "QFile"
@@ -134,3 +134,13 @@ Get a collection of objects in OpenBR that match provided regular expressions. T
  
         // Find all 'Rnd' Transforms
         Context::objects("Transform", "Rnd.*", false); // returns ["RndPoint", "RndRegion", "RndRotate", "RndSample", "RndSubspace"]
+
+<!-- Links -->
+[Qt]: http://qt-project.org/ "Qt"
+[QApplication]: http://doc.qt.io/qt-5/qapplication.html "QApplication"
+[QCoreApplication]: http://doc.qt.io/qt-5/qcoreapplication.html "QCoreApplication"
+
+[QRegExp]: http://doc.qt.io/qt-5/QRegExp.html "QRegExp"
+
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
-<!-- DISTANCE -->
-
 Inherits [Object](../object/object.md)
  
 Plugin base class for comparing two [Templates](../template/template.md)
@@ -62,7 +62,7 @@ This is a virtual function. Compare two [TemplateLists](../templatelist/template
 * **output:** (void)
  
  
-## [QList][QList]&lt;float&gt; compare(const [TemplateList][TemplateList] &target, const [Template](../template/template.md) &query) {: #compare-2 }
+## [QList][QList]&lt;float&gt; compare(const [TemplateList](../templatelist/templatelist.md) &target, const [Template](../template/template.md) &query) {: #compare-2 }
  
 This is a virtual function. Compare a query against a list of targets. Each comparison results in a floating point response which is the distance between the query and a specific target.
  
@@ -211,3 +211,8 @@ This is a protected function. Makes a child distance from a provided description
     description | const [QString][QString] & | Description of the child distance
  
 * **output:** ([Distance](distance.md) \*) Returns a pointer to the created child distance
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -44,3 +44,8 @@ Create a [Distance](distance.md) from an OpenBR algorithm string. The [Distance]
  
     Distance::fromAlgorithm("EnrollmentTransform:Distance")->decription(); // returns "Distance"
     Distance::fromAlgorithm("EnrollmentTransform!Distance1+Distance2")->decription(); // returns "Pipe(distances=[Distance1,Distance2])
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
+[QSharedPointer]: http://doc.qt.io/qt-5/qsharedpointer.html "QSharedPointer"
 Constructor \| Destructor | Description
 --- | ---
 Factory([QString][QString] name) | This is a special constructor in OpenBR. It is used to register new objects in the [registry](members.md#registry).
-virtual ~Factory() | Default destructor
 \ No newline at end of file
+virtual ~Factory() | Default destructor
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
 Member | Type | Description
 --- | --- | ---
 <a class="table-anchor" id=registry></a>registry | static [QMap][QMap]&lt;[QString][QString],[Factory](factory.md)&lt;<tt>T</tt>&gt;\*&gt; | List of all objects that have been registered with the factory. Registered objects are stored in this static registry by abstraction type.
+
+<!-- Links -->
+[QMap]: http://doc.qt.io/qt-5/qmap.html "QMap"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
@@ -88,3 +88,9 @@ Get the parameters for the plugin defined by the provided name.
  
         Factory<Transform>::parameters("Example"); // returns "int property1 = 1, float property2 = 2.5, QString property3 = Value"
         Factory<Transform>::parameters("Example(property3=NewValue)"); // returns "int property1 = 1, float property2 = 2.5, QString property3 = NewValue"
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QSharedPointer]: http://doc.qt.io/qt-5/qsharedpointer.html "QSharedPointer"
-## Constructors {: #file-constructors }
-
 Constructor | Description
 --- | ---
 File() | Default constructor. Sets [name](members.md#name) to false.
@@ -7,3 +5,8 @@ File(const [QString][QString] &amp;file) | Initializes the file by calling the priva
 File(const [QString][QString] &file, const [QVariant][QVariant] &label) | Initializes the file by calling the private function init. Append label to the [metadata](members.md#m_metadata) using the key "Label".
 File(const char \*file) | Initializes the file with a c-style string.
 File(const [QVariantMap][QVariantMap] &metadata) | Sets [name](members.md#name) to false and sets the [file metadata](members.md#m_metadata) to metadata.
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
+[QVariantMap]: http://doc.qt.io/qt-5/qvariant.html#QVariantMap-typedef "QVariantMap"
-# File
-
 A file path with associated metadata.
  
 See:
@@ -63,3 +61,9 @@ Age             | float          | Age used for demographic filtering
 Gender          | QString        | Subject gender
 Train           | bool           | The data is for training, as opposed to enrollment
 _\*              | \*              | Reserved for internal use
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QVariantList]: http://doc.qt.io/qt-5/qvariant.html#QVariantList-typedef "QVariantList"
+[QRectF]: http://doc.qt.io/qt-5/qrectf.html "QRectF"
+[QPointF]: http://doc.qt.io/qt-5/qpointf.html "QPointF"
@@ -1272,3 +1272,43 @@ Replace the rects stored at [metadata](members.md#m_metadata) with a provided li
  
         file.setRects(QList<cv::Rect>() << cv::Rect(3, 3, 5, 5) << cv::Rect(4, 4, 5, 5));
         file.rects(); // returns [QRectF(3, 3, 5x5), QRectF(4, 4, 5x5)]
+
+<!-- Links -->
+[Qt]: http://qt-project.org/ "Qt"
+[QApplication]: http://doc.qt.io/qt-5/qapplication.html "QApplication"
+[QCoreApplication]: http://doc.qt.io/qt-5/qcoreapplication.html "QCoreApplication"
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
+[Qt Property System]: http://doc.qt.io/qt-5/properties.html "Qt Property System"
+
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
+
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QMap]: http://doc.qt.io/qt-5/qmap.html "QMap"
+[QHash]: http://doc.qt.io/qt-5/qhash.html "QHash"
+
+[QRectF]: http://doc.qt.io/qt-5/qrectf.html "QRectF"
+[QPoint]: http://doc.qt.io/qt-5/qpoint.html "QPoint"
+[QPointF]: http://doc.qt.io/qt-5/qpointf.html "QPointF"
+
+[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
+[QVariantList]: http://doc.qt.io/qt-5/qvariant.html#QVariantList-typedef "QVariantList"
+[QVariantMap]: http://doc.qt.io/qt-5/qvariant.html#QVariantMap-typedef "QVariantMap"
+
+[QRegExp]: http://doc.qt.io/qt-5/QRegExp.html "QRegExp"
+[QThread]: http://doc.qt.io/qt-5/qthread.html "QThread"
+[QFile]: http://doc.qt.io/qt-5/qfile.html "QFile"
+
+[QSharedPointer]: http://doc.qt.io/qt-5/qsharedpointer.html "QSharedPointer"
+
+[QTime]: http://doc.qt.io/qt-5/QTime.html "QTime"
+[QDebug]: http://doc.qt.io/qt-5/qdebug.html "QDebug"
+[QDataStream]: http://doc.qt.io/qt-5/qdatastream.html "QDataStream"
+[QByteArray]: http://doc.qt.io/qt-5/qbytearray.html "QByteArray"
+
+[R]: http://www.r-project.org/ "R"
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
+[Rect]: http://docs.opencv.org/modules/core/doc/basic_structures.html#rect "Rect"
+[InputArray]: http://docs.opencv.org/modules/core/doc/basic_structures.html#inputarray "InputArray"
+[OutputArray]: http://docs.opencv.org/modules/core/doc/basic_structures.html#outputarray "OutputArray"
+[OpenCV Image Formats]: http://docs.opencv.org/modules/highgui/doc/reading_and_writing_images_and_video.html?highlight=imread#imread "OpenCV Image Formats"
@@ -3,3 +3,8 @@ Member | Type | Description
 <a class="table-anchor" id="name"></a>name | [QString][QString] | Path to a file on disk
 <a class="table-anchor" id=fte></a>fte | bool | Failed to enroll. If true this file failed to be processed somewhere in the template enrollment algorithm
 <a class="table-anchor" id=m_metadata></a>m_metadata | [QVariantMap][QVariantMap] | Map for storing metadata. It is a [QString][QString], [QVariant][QVariant] key value pairing.
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
+[QVariantMap]: http://doc.qt.io/qt-5/qvariant.html#QVariantMap-typedef "QVariantMap"
@@ -194,3 +194,11 @@ Deserialize a file from a data stream.
             out.name; // returns "../path/to/pictures/picture.jpg"
             out.flat(); // returns "../path/to/pictures/picture.jpg[Key=Value]"
         }
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QDataStream]: http://doc.qt.io/qt-5/qdatastream.html "QDataStream"
+[QRectF]: http://doc.qt.io/qt-5/qrectf.html "QRectF"
+[QPointF]: http://doc.qt.io/qt-5/qpointf.html "QPointF"
 Member | Type | Description
 --- | --- | ---
 <a class="table-anchor" id="f"></a>f | [QFile][QFile] | The file on disk. It has the same name as [file](../object/members.md#file)
+
+<!-- Links -->
+[QFile]: http://doc.qt.io/qt-5/qfile.html "QFile"
@@ -4,3 +4,7 @@ FileList() | Default constructor. Doesn&#39;t do anything.
 FileList(int n) | Intialize the [FileList](filelist.md) with n empty [Files](../file/file.md)
 FileList(const [QStringList][QStringList] &files) | Initialize the [FileList](filelist.md) with a list of strings. Each string should have the format "filename[key1=value1, key2=value2, ... keyN=valueN]"
 FileList(const [QList][QList]&lt;[File](../file/file.md)&gt; &files) | Initialize the [FileList](filelist.md) from a list of [files](../file/file.md).
+
+<!-- Links -->
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
-<!-- FILELIST -->
-
 Inherits [QList][QList]&lt;[File](../file/file.md)&gt;.
  
 See:
@@ -9,3 +7,6 @@ See:
 * [Functions](functions.md)
  
 A convenience class for dealing with lists of files.
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
@@ -104,3 +104,8 @@ Get the number of [Files](../file/file.md) in the list that have [failed to enro
  
         FileList fList(QList<File>() << f1 << f2 << f3);
         fList.failures(); // returns 2
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
@@ -28,3 +28,6 @@ A *format* is a [File](../file/file.md) representing a [Template](../template/te
 * binary
  
 Many of these extensions are unique to OpenBR. Please look at the relevant [Format plugin](../../../plugin_docs/format.md) for information on formatting and other concerns.
+
+<!-- Links -->
+[OpenCV Image Formats]: http://docs.opencv.org/modules/highgui/doc/reading_and_writing_images_and_video.html?highlight=imread#imread "OpenCV Image Formats"
@@ -39,3 +39,6 @@ Write a template to disk at the provided file location.
         Template t("picture.jpg");
  
         Format::write("new_pic_location.jpg", t); // Write t to "new_pic_location.jpg"
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
@@ -70,3 +70,6 @@ Set a value in [data](members.md#data) at the provided row and column indices.
  
         output->set(10.0, 1, 2);
         output->toString(1, 2); // Returns "10.0"
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
 Member | Type | Description
 --- | --- | ---
 <a class="table-anchor" id=data></a>data | [Mat][Mat] | Matrix to store comparison data
+
+<!-- Links -->
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -453,3 +453,11 @@ Provides a wrapper on [getChildren](#getchildren-1) as a convenience to allow th
         QScopedPointer<Transform> transform(Factory<Transform>::make(".Parent"));
         transform->getChildren<Transform>(); // returns [br::ChildTransform(0x7fc10bf01050, name = "Child")]
         transform->getChildren<Transform>().first()->parameters(); // returns ["int property1 = 2", "float property2 = 2"]
+
+<!-- Links -->
+[QDataStream]: http://doc.qt.io/qt-5/qdatastream.html "QDataStream"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
+[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
@@ -29,3 +29,6 @@ This macro provides an extension to the [Qt Property System][Qt Property System]
  
             ...
         };
+
+<!-- Links -->
+[Qt Property System]: http://doc.qt.io/qt-5/properties.html "Qt Property System"
@@ -10,3 +10,6 @@ See:
 * [Functions](functions.md)
  
 This is the base class of all OpenBR plugins. [Objects](object.md) are constructed from [Files](../file/file.md). The [File's](../file/file.md) [name](../file/members.md#name) specifies which plugin to construct and the [File's](../file/file.md) [metadata](../file/members.md#m_metadata) provides initialization values for the plugin's properties.
+
+<!-- Links -->
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
@@ -17,3 +17,7 @@ Split the provided string using the provided split character. Lexical scoping of
 * **example:**
  
         Object::parse("Transform1(p1=v1,p2=v2),Transform2(p1=v3,p2=v4)"); // returns ["Transform1(p1=v1,p2=v2)", "Transform2(p1=v3,p2=v4)"]
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
 Member | Type | Description
 --- | --- | ---
-<a class="table-anchor" id=targetfiles></a>targetFiles | [FileList][../filelist/filelist.md] | List of files representing the target templates
+<a class="table-anchor" id=targetfiles></a>targetFiles | [FileList](../filelist/filelist.md) | List of files representing the target templates
 <a class="table-anchor" id=queryfiles></a>queryFiles | [FileList](../filelist/filelist.md) | List of files representing the query templates
 <a class="table-anchor" id=selfsimilar></a>selfSimilar | bool | True if targetFiles == queryFiles, false otherwise
@@ -89,3 +89,7 @@ This is a pure virtual function. Get the size of the feature space.
  
         rep1->numFeatures(); // returns 1000
         rep2->numFeatures(); // returns 25643
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -18,4 +18,8 @@ Make a [Representation](representation.md) from a string. The string is passed t
 * **example:**
  
         Representation *rep = Representation::make("Representation(property1=value1)");
-        rep->description(); // Returns "Representation(property1=value1)"
 \ No newline at end of file
+        rep->description(); // Returns "Representation(property1=value1)"
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
@@ -4,3 +4,6 @@ Template() | The default template constructor. It doesn&#39;t do anything.
 Template(const [File](../file/file.md) &file) | Sets [file](members.md#file) to the given [File](../file/file.md).
 Template(const [File](../file/file.md) &file, const [Mat][Mat] &mat) | Sets [file](members.md#file) to the given [File](../file/file.md) and appends the given [Mat][Mat] to itself.
 Template(const [Mat][Mat] &mat) | Appends the given [Mat][Mat] to itself
+
+<!-- Links -->
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -162,7 +162,7 @@ Append the contents of another template. The [files](members.md#file) are append
  
     Parameter | Type | Description
     --- | --- | ---
-    other | const [Template][template.md] & | Template to be merged
+    other | const [Template](template.md) & | Template to be merged
  
 * **output:** (void)
 * **example:**
@@ -221,3 +221,8 @@ Clone the template
  
         t2.file; // returns "picture.jpg"
         t2; // returns ["1"]
+
+<!-- Links -->
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
+[InputArray]: http://docs.opencv.org/modules/core/doc/basic_structures.html#inputarray "InputArray"
+[OutputArray]: http://docs.opencv.org/modules/core/doc/basic_structures.html#outputarray "OutputArray"
@@ -55,3 +55,6 @@ Deserialize a template
             out.file; // returns "picture.jpg"
             out; // returns ["1"]
         }
+
+<!-- Links -->
+[QDataStream]: http://doc.qt.io/qt-5/qdatastream.html "QDataStream"
@@ -20,3 +20,7 @@ In the cases where exactly one image is expected, the template provides the func
 Casting operators are also provided to pass the template into image processing functions expecting matrices.
  
 Metadata related to the template that is computed during enrollment (ex. bounding boxes, eye locations, quality metrics, ...) should be assigned to the template's [File](members.md#file) member.
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -3,3 +3,6 @@ Constructor | Description
 TemplateList() | The default [TemplateList](templatelist.md) constructor. Doesn't do anything.
 TemplateList(const [QList][QList]&lt;[Template](../template/template.md)&gt; &templates) | Initialize the [TemplateList](templatelist.md) with a list of templates. The given list is appended
 TemplateList(const [QList][QList]&lt;[File](../file/file.md)&gt; &files) | Initialize the [TemplateList](templatelist.md) with a list of [Files](../file/file.md). Each [File](../file/file.md) is treated like a template and appended.
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
@@ -304,3 +304,11 @@ Get the indices of every [Template](../template/template.md) that has a provided
  
         TemplateList tList(QList<Template>() << t1 << t2 << t3);
         tList.find<QString>("Key", "Value2"); // returns [1, 2]
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QHash]: http://doc.qt.io/qt-5/qhash.html "QHash"
+[QMap]: http://doc.qt.io/qt-5/qmap.html "QMap"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -29,7 +29,7 @@ Create a template from a memory buffer of individual templates. This is compatib
     --- | --- | ---
     buffer | const [QByteArray][QByteArray] & | Raw data buffer to be enrolled
  
-* **output:** ([TemplateList][TemplateList]) Returns a [TemplateList](templatelist.md) created by enrolling the buffer
+* **output:** ([TemplateList](templatelist.md)) Returns a [TemplateList](templatelist.md) created by enrolling the buffer
  
  
 ## [TemplateList](templatelist.md) relabel(const [TemplateList](templatelist.md) &tl, const [QString][QString] &propName, bool preserveIntegers) {: #relabel }
@@ -63,3 +63,7 @@ Relabel the values associated with a given key in the [metadata](../file/members
  
         relabeled = TemplateList::relabel(tList, "Class", false);
         relabeled.files(); // returns [[Class=1, Label=0], [Class=10, Label=1], [Class=100, Label=2]]
+
+<!-- Links -->
+[QByteArray]: http://doc.qt.io/qt-5/qbytearray.html "QByteArray"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
@@ -9,3 +9,6 @@ See:
 * [Constructors](constructors.md)
 * [Static Functions](statics.md)
 * [Functions](functions.md)
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
-<!-- TIMEVARYINGTRANSFORM -->
-
 Inherits [Transform](../transform/transform.md)
  
 A [Transform](../transform/transform.md) that can change state at project time.
@@ -417,3 +417,9 @@ This is a protected function. Makes a child transform from a provided descriptio
     description | const [QString][QString] & | Description of the child transform
  
 * **output:** ([Transform](transform.md) \*) Returns a pointer to the created child transform
+
+<!-- Links -->
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QSharedPointer]: http://doc.qt.io/qt-5/qsharedpointer.html "QSharedPointer"
@@ -2,3 +2,6 @@ Member | Type | Description
 --- | --- | ---
 <a class="table-anchor" id=independent></a>independent | bool | True if the transform is independent, false otherwise. Independent transforms process each [Mat][Mat] in a [Template](../template/template.md) independently. This means that a new instance of the transform is created for each [Mat][Mat]. If the transform is [trainable](#trainable) and the training data has more then one [Mat][Mat] per template, each created instance of the transform is trained separately. Please see [Training Algorithms](../../../tutorials.md#training-algorithms) for more details.
 <a class="table-anchor" id=trainable></a>trainable | bool | True if the transform is trainable, false otherwise. Trainable transforms need to overload the [train](functions.md#train-1) function.
+
+<!-- Links -->
+[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
@@ -191,3 +191,9 @@ Convenience function for [load](../object/functions.md#load)
         Transform out;
         stream >> out;
         out->description(); // returns "Example(property1=value1,property2=value2)"
+
+<!-- Links -->
+[QString]: http://doc.qt.io/qt-5/QString.html "QString"
+[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
+[QSharedPointer]: http://doc.qt.io/qt-5/qsharedpointer.html "QSharedPointer"
+[QDataStream]: http://doc.qt.io/qt-5/qdatastream.html "QDataStream"
@@ -151,3 +151,6 @@ Get a smart copy, meaning a copy only if one is required, of this transform
     newTransform | bool & | True if a new, simplified, transform was allocated inside this call, false otherwise
  
 * **output:** ([Transform](../transform/transform.md) \*) Returns itself if the child transform is not time varying (no copy needed). newTransform is set to false in this case. If the child is time varying make a copy by calling [smartCopy](../timevaryingtransform/functions.md#smartcopy) on the child. newTransform is set to true in this case.
+
+<!-- Links -->
+[QList]: http://doc.qt.io/qt-5/QList.html "QList"
-<!-- Contributors -->
-
-[jklontz]: https://github.com/jklontz "Joshua C. Klontz, jklontz@ieee.org"
-[mburge]: https://github.com/mburge "Dr. Mark J. Burge mburge@gmail.com"
-[bklare]: https://github.com/bklare "Dr. Brendan F. Klare brendan.klare@ieee.org"
-[mmtaborsky]: https://github.com/mmtaborsky "M. M. Taborsky mmtaborsky@gmail.com"
-[sklum]: https://github.com/sklum "Scott J. Klum scott.klum@gmail.com"
-[caotto]: https://github.com/caotto "Charles A. Otto ottochar@gmail.com"
-[lbestrowden]: https://github.com/lbestrowden "Lacey S. Best-Rowden bestrow1@msu.edu"
-[imaus10]: https://github.com/imaus10 "Austin Blanton imaus10@gmail.com"
-[dgcrouse]: https://github.com/dgcrouse "David G. Crouse dgcrouse@gmail.com"
-[baba1472]: https://github.com/baba1472 "Babatunde Ogunfemi ogunfemi.b@gmail.com"
-[jcheney]: https://github.com/JordanCheney "Jordan Cheney jordan.cheney@gmail.com"
-<!-- Links -->
-[Qt]: http://qt-project.org/ "Qt"
-[QApplication]: http://doc.qt.io/qt-5/qapplication.html "QApplication"
-[QCoreApplication]: http://doc.qt.io/qt-5/qcoreapplication.html "QCoreApplication"
-[QObject]: http://doc.qt.io/qt-5/QObject.html "QObject"
-[Qt Property System]: http://doc.qt.io/qt-5/properties.html "Qt Property System"
-
-[QString]: http://doc.qt.io/qt-5/QString.html "QString"
-[QStringList]: http://doc.qt.io/qt-5/qstringlist.html "QStringList"
-
-[QList]: http://doc.qt.io/qt-5/QList.html "QList"
-[QMap]: http://doc.qt.io/qt-5/qmap.html "QMap"
-[QHash]: http://doc.qt.io/qt-5/qhash.html "QHash"
-
-[QRectF]: http://doc.qt.io/qt-5/qrectf.html "QRectF"
-[QPoint]: http://doc.qt.io/qt-5/qpoint.html "QPoint"
-[QPointF]: http://doc.qt.io/qt-5/qpointf.html "QPointF"
-
-[QVariant]: http://doc.qt.io/qt-5/qvariant.html "QVariant"
-[QVariantList]: http://doc.qt.io/qt-5/qvariant.html#QVariantList-typedef "QVariantList"
-[QVariantMap]: http://doc.qt.io/qt-5/qvariant.html#QVariantMap-typedef "QVariantMap"
-
-[QRegExp]: http://doc.qt.io/qt-5/QRegExp.html "QRegExp"
-[QThread]: http://doc.qt.io/qt-5/qthread.html "QThread"
-[QFile]: http://doc.qt.io/qt-5/qfile.html "QFile"
-
-[QSharedPointer]: http://doc.qt.io/qt-5/qsharedpointer.html "QSharedPointer"
-
-[QTime]: http://doc.qt.io/qt-5/QTime.html "QTime"
-[QDebug]: http://doc.qt.io/qt-5/qdebug.html "QDebug"
-[QDataStream]: http://doc.qt.io/qt-5/qdatastream.html "QDataStream"
-[QByteArray]: http://doc.qt.io/qt-5/qbytearray.html "QByteArray"
-
-[R]: http://www.r-project.org/ "R"
-[Mat]: http://docs.opencv.org/modules/core/doc/basic_structures.html#mat "Mat"
-[Rect]: http://docs.opencv.org/modules/core/doc/basic_structures.html#rect "Rect"
-[InputArray]: http://docs.opencv.org/modules/core/doc/basic_structures.html#inputarray "InputArray"
-[OutputArray]: http://docs.opencv.org/modules/core/doc/basic_structures.html#outputarray "OutputArray"
-[OpenCV Image Formats]: http://docs.opencv.org/modules/highgui/doc/reading_and_writing_images_and_video.html?highlight=imread#imread "OpenCV Image Formats"
@@ -5,8 +5,6 @@ copyright: 2012 The MITRE Corporation
  
 theme: readthedocs
 theme_dir: themes/readthedocs/
-links_file: docs/links.md
-contributors_file: docs/contributors.md
  
 include_next_prev: False
  
@@ -101,11 +101,10 @@ def main():
     docs_dir = '../docs/'
     ext = 'md'
  
-    links = open('../docs/links.md', 'r').read()
     md_files = walk(docs_dir, ext)
     md = markdown.Markdown( ['meta', 'toc', 'tables', 'fenced_code', 'attr_list', 'footnotes'] )
  
-    html_files = [md.convert(open(f, 'r', encoding='utf-8').read() + "\n\n" + links) for f in md_files]
+    html_files = [md.convert(open(f, 'r', encoding='utf-8').read()) for f in md_files]
  
     headers = {}
     links = {}
@@ -17,6 +17,20 @@ abstractions = [&#39;FileList&#39;, &#39;File&#39;,
                 'Classifier'
                ]
  
+contributors = [
+                '[jklontz]: https://github.com/jklontz "Joshua C. Klontz, jklontz@ieee.org"',
+                '[mburge]: https://github.com/mburge "Dr. Mark J. Burge mburge@gmail.com"',
+                '[bklare]: https://github.com/bklare "Dr. Brendan F. Klare brendan.klare@ieee.org"',
+                '[mmtaborsky]: https://github.com/mmtaborsky "M. M. Taborsky mmtaborsky@gmail.com"',
+                '[sklum]: https://github.com/sklum "Scott J. Klum scott.klum@gmail.com"',
+                '[caotto]: https://github.com/caotto "Charles A. Otto ottochar@gmail.com"',
+                '[lbestrowden]: https://github.com/lbestrowden "Lacey S. Best-Rowden bestrow1@msu.edu"',
+                '[imaus10]: https://github.com/imaus10 "Austin Blanton imaus10@gmail.com"',
+                '[dgcrouse]: https://github.com/dgcrouse "David G. Crouse dgcrouse@gmail.com"',
+                '[baba1472]: https://github.com/baba1472 "Babatunde Ogunfemi ogunfemi.b@gmail.com"',
+                '[jcheney]: https://github.com/JordanCheney "Jordan Cheney jordan.cheney@gmail.com"'
+               ]
+
 def subfiles(path):
     return [name for name in os.listdir(path) if os.path.isfile(os.path.join(path, name)) and not name[0] == '.']
  
@@ -255,4 +269,9 @@ def main():
  
         for name in sorted(names):
             output_file.write(docs[name])
+
+        output_file.write("<!-- Contributors -->\n")
+        for contributor in contributors:
+            output_file.write(contributor + "\n")
+
 main()