core.cpp
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright 2012 The MITRE Corporation *
* *
* Licensed under the Apache License, Version 2.0 (the "License"); *
* you may not use this file except in compliance with the License. *
* You may obtain a copy of the License at *
* *
* http://www.apache.org/licenses/LICENSE-2.0 *
* *
* Unless required by applicable law or agreed to in writing, software *
* distributed under the License is distributed on an "AS IS" BASIS, *
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. *
* See the License for the specific language governing permissions and *
* limitations under the License. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include <openbr_plugin.h>
#include "core/common.h"
#include "core/qtutils.h"
using namespace br;
/**** ALGORITHM_CORE ****/
struct AlgorithmCore
{
QSharedPointer<Transform> transform;
QSharedPointer<Distance> distance;
AlgorithmCore(const QString &name)
{
this->name = name;
init(name);
}
bool isClassifier() const
{
return distance.isNull();
}
void train(const File &input, const QString &model)
{
TemplateList data(TemplateList::fromGallery(input));
if (transform.isNull()) qFatal("Null transform.");
qDebug("%d training files", data.size());
QTime time; time.start();
qDebug("Training Enrollment");
transform->train(data);
if (!distance.isNull()) {
qDebug("Projecting Enrollment");
data >> *transform;
qDebug("Training Comparison");
distance->train(data);
}
if (!model.isEmpty()) {
qDebug("Storing %s", qPrintable(QFileInfo(model).fileName()));
store(model);
}
qDebug("Training Time (sec): %d", time.elapsed()/1000);
}
void store(const QString &model) const
{
// Create stream
QByteArray data;
QDataStream out(&data, QFile::WriteOnly);
// Serialize algorithm to stream
out << name;
transform->store(out);
const bool hasComparer = !distance.isNull();
out << hasComparer;
if (hasComparer) distance->store(out);
out << Globals->classes;
// Compress and save to file
QtUtils::writeFile(model, data, -1);
}
void load(const QString &model)
{
// Load from file and decompress
QByteArray data;
QtUtils::readFile(model, data, true);
// Create stream
QDataStream in(&data, QFile::ReadOnly);
// Load algorithm
in >> name; init(Globals->abbreviations.contains(name) ? Globals->abbreviations[name] : name);
transform->load(in);
bool hasDistance; in >> hasDistance;
if (hasDistance) distance->load(in);
in >> Globals->classes;
}
File getMemoryGallery(const File &file) const
{
return name + file.baseName() + file.hash() + ".mem";
}
FileList enroll(File input, File gallery = File())
{
FileList fileList;
if (gallery.isNull()) gallery = getMemoryGallery(input);
QScopedPointer<Gallery> g(Gallery::make(gallery));
if (g.isNull()) return FileList();
if (gallery.contains("read") || gallery.contains("cache")) {
fileList = g->files();
}
if (!fileList.isEmpty() && gallery.contains("cache"))
return fileList;
const TemplateList i(TemplateList::fromGallery(input));
if (i.isEmpty()) return fileList; // Nothing to enroll
if (transform.isNull()) qFatal("Null transform.");
const int blocks = Globals->blocks(i.size());
Globals->currentStep = 0;
Globals->totalSteps = i.size();
Globals->startTime.start();
const bool noDuplicates = gallery.contains("noDuplicates");
QStringList fileNames = noDuplicates ? fileList.names() : QStringList();
const int subBlockSize = 4*std::max(1, Globals->parallelism);
const int numSubBlocks = ceil(1.0*Globals->blockSize/subBlockSize);
int totalCount = 0, failureCount = 0;
double totalBytes = 0;
for (int block=0; block<blocks; block++) {
for (int subBlock = 0; subBlock<numSubBlocks; subBlock++) {
TemplateList data = i.mid(block*Globals->blockSize + subBlock*subBlockSize, subBlockSize);
if (data.isEmpty()) break;
if (noDuplicates)
for (int i=data.size()-1; i>=0; i--)
if (fileNames.contains(data[i].file.name))
data.removeAt(i);
const int numFiles = data.size();
if (Globals->backProject) {
TemplateList backProjectedData;
transform->backProject(data, backProjectedData);
data = backProjectedData;
} else {
data >> *transform;
}
g->writeBlock(data);
const FileList newFiles = data.files();
fileList.append(newFiles);
totalCount += newFiles.size();
failureCount += newFiles.failures();
totalBytes += data.bytes<double>();
Globals->currentStep += numFiles;
Globals->printStatus();
}
}
const float speed = 1000 * Globals->totalSteps / Globals->startTime.elapsed() / std::max(1, abs(Globals->parallelism));
if (!Globals->quiet && (Globals->totalSteps > 1))
fprintf(stderr, "\rSPEED=%.1e SIZE=%.4g FAILURES=%d/%d \n",
speed, totalBytes/totalCount, failureCount, totalCount);
Globals->totalSteps = 0;
return fileList;
}
void retrieveOrEnroll(const File &file, QScopedPointer<Gallery> &gallery, FileList &galleryFiles)
{
if ((file.suffix() == "gal") || (file.suffix() == "mem")) {
// Retrieve it
gallery.reset(Gallery::make(file));
galleryFiles = gallery->files();
} else {
// Was it already enrolled in memory?
gallery.reset(Gallery::make(getMemoryGallery(file)));
galleryFiles = gallery->files();
if (!galleryFiles.isEmpty()) return;
// Enroll it
enroll(file);
gallery.reset(Gallery::make(getMemoryGallery(file)));
galleryFiles = gallery->files();
}
}
void compare(File targetGallery, File queryGallery, File output)
{
if (output.exists() && output.getBool("cache")) return;
if (queryGallery == ".") queryGallery = targetGallery;
QScopedPointer<Gallery> t, q;
FileList targetFiles, queryFiles;
retrieveOrEnroll(targetGallery, t, targetFiles);
retrieveOrEnroll(queryGallery, q, queryFiles);
QScopedPointer<Output> o(Output::make(output, targetFiles, queryFiles));
if (distance.isNull()) qFatal("Null distance.");
Globals->currentStep = 0;
Globals->totalSteps = double(targetFiles.size()) * double(queryFiles.size());
Globals->startTime.start();
int queryBlock = -1;
bool queryDone = false;
while (!queryDone) {
queryBlock++;
TemplateList queries = q->readBlock(&queryDone);
int targetBlock = -1;
bool targetDone = false;
while (!targetDone) {
targetBlock++;
TemplateList targets = t->readBlock(&targetDone);
o->setBlock(queryBlock, targetBlock);
distance->compare(targets, queries, o.data());
Globals->currentStep += double(targets.size()) * double(queries.size());
Globals->printStatus();
}
}
const float speed = 1000 * Globals->totalSteps / Globals->startTime.elapsed() / std::max(1, abs(Globals->parallelism));
if (!Globals->quiet && (Globals->totalSteps > 1)) fprintf(stderr, "\rSPEED=%.1e \n", speed);
Globals->totalSteps = 0;
}
private:
QString name;
QString getFileName(const QString &description) const
{
const QString file = Globals->sdkPath + "/share/openbr/models/algorithms/" + description;
return QFileInfo(file).exists() ? file : QString();
}
void init(QString description)
{
// Check if a trained binary already exists for this algorithm
const QString file = getFileName(description);
if (!file.isEmpty()) description = file;
if (QFileInfo(description).exists()) {
qDebug("Loading %s", qPrintable(QFileInfo(description).fileName()));
load(description);
return;
}
// Expand abbreviated algorithms to their full strings
if (Globals->abbreviations.contains(description))
return init(Globals->abbreviations[description]);
QStringList words = QtUtils::parse(description, ':');
if (words.size() > 2) qFatal("Invalid algorithm format.");
transform = QSharedPointer<Transform>(Transform::make(words[0], NULL));
if (words.size() > 1) distance = QSharedPointer<Distance>(Distance::make(words[1], NULL));
}
};
class AlgorithmManager : public Initializer
{
Q_OBJECT
public:
static QHash<QString, QSharedPointer<AlgorithmCore> > algorithms;
static QMutex algorithmsLock;
void initialize() const {}
void finalize() const
{
algorithms.clear();
}
static QSharedPointer<AlgorithmCore> getAlgorithm(const QString &algorithm)
{
if (algorithm.isEmpty()) qFatal("No default algorithm set.");
if (!algorithms.contains(algorithm)) {
// Some algorithms are recursive, so we need to construct them outside the lock.
QSharedPointer<AlgorithmCore> algorithmCore(new AlgorithmCore(algorithm));
algorithmsLock.lock();
if (!algorithms.contains(algorithm))
algorithms.insert(algorithm, algorithmCore);
algorithmsLock.unlock();
}
return algorithms[algorithm];
}
};
QHash<QString, QSharedPointer<AlgorithmCore> > AlgorithmManager::algorithms;
QMutex AlgorithmManager::algorithmsLock;
BR_REGISTER(Initializer, AlgorithmManager)
bool br::IsClassifier(const QString &algorithm)
{
qDebug("Checking if %s is a classifier", qPrintable(algorithm));
return AlgorithmManager::getAlgorithm(algorithm)->isClassifier();
}
void br::Train(const File &input, const File &model)
{
qDebug("Training on %s%s", qPrintable(input.flat()),
model.isNull() ? "" : qPrintable(" to " + model.flat()));
AlgorithmManager::getAlgorithm(model.getString("algorithm"))->train(input, model);
}
FileList br::Enroll(const File &input, const File &gallery)
{
qDebug("Enrolling %s%s", qPrintable(input.flat()),
gallery.isNull() ? "" : qPrintable(" to " + gallery.flat()));
return AlgorithmManager::getAlgorithm(gallery.getString("algorithm"))->enroll(input, gallery);
}
void br::Compare(const File &targetGallery, const File &queryGallery, const File &output)
{
qDebug("Comparing %s and %s%s", qPrintable(targetGallery.flat()),
qPrintable(queryGallery.flat()),
output.isNull() ? "" : qPrintable(" to " + output.flat()));
AlgorithmManager::getAlgorithm(output.getString("algorithm"))->compare(targetGallery, queryGallery, output);
}
void br::Convert(const File &src, const File &dst)
{
qDebug("Converting %s to %s", qPrintable(src.flat()), qPrintable(dst.flat()));
QScopedPointer<Format> before(Factory<Format>::make(src));
QScopedPointer<Format> after(Factory<Format>::make(dst));
after->write(before->read());
}
void br::Cat(const QStringList &inputGalleries, const QString &outputGallery)
{
qDebug("Concatenating %d galleries to %s", inputGalleries.size(), qPrintable(outputGallery));
foreach (const QString &inputGallery, inputGalleries)
if (inputGallery == outputGallery)
qFatal("outputGallery must not be in inputGalleries.");
QScopedPointer<Gallery> og(Gallery::make(outputGallery));
foreach (const QString &inputGallery, inputGalleries) {
QScopedPointer<Gallery> ig(Gallery::make(inputGallery));
bool done = false;
while (!done) og->writeBlock(ig->readBlock(&done));
}
}
QSharedPointer<br::Transform> br::Transform::fromAlgorithm(const QString &algorithm)
{
return AlgorithmManager::getAlgorithm(algorithm)->transform;
}
QSharedPointer<br::Distance> br::Distance::fromAlgorithm(const QString &algorithm)
{
return AlgorithmManager::getAlgorithm(algorithm)->distance;
}
#include "core.moc"