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This is a massive rewrite of the help text and cli.rst section of the manual. All command-line flags now have their own help and are specifically index. qpdf --help is completely redone.
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The agogo theme doesn't do very well on narrow screens. The code blocks were used for shell commands but were using Python syntax highlighting.
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These are for ancient versions.
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This was inserted by sphinx-quickstart, but it doesn't do anything for us.
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Pandoc doesn't convert <xref> correctly, but it does so consistently, so this commit just changes all xref links to :ref:.
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At one time, it seems that I was starting to use the <firstterm> feature of docbook, but I forgot about it long ago, and there is nothing consistent. In the absence of an actual glossary, just use emphasis for terminology and don't tag it in any special way. This could be fixed later if we wanted to.
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All occurrences are in :file: or :samp: now.