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This is a massive rewrite of the help text and cli.rst section of the manual. All command-line flags now have their own help and are specifically index. qpdf --help is completely redone.
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The agogo theme doesn't do very well on narrow screens. The code blocks were used for shell commands but were using Python syntax highlighting.
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Run sphinx-quickstart. Throw everything away except conf.py and index.rst. We will incorporate this into our own build system.