OpenSystemsDevelopment / qpdf

Set parsed offset at the same time as setting description.

Add optional parameter shallow. Change logic errors to runtime errors.

QPDFValueProxy wasn't a good name for it. We decided the evil of
having the header file be named QPDFObject_private.hh was less than
the evil of having the class be named something other than what it
should have been named.

I decided that it's actually fine to copy a direct object to another
QPDF. Even if we eventually prevent a QPDFObject from having multiple
parents, this could happen if an object is moved.

This is in preparation for restoring a QPDFObject.hh to ease the
transition on qpdf_object_type_e.

This commit was created by
* Renaming QPDFObject.cc and QPDFObject.hh
* Replacing QPDFObject\b with QPDFValueProxy (where \b is word
  boundary)
* Running format-code
* Manually resorting files in libqpdf/CMakeLists.txt
* Manually refilling the comment in QPDF.hh near class Resolver

On destruction of the QPDF object replace all indirect object references
with direct nulls.

Remove all existing code to release resolved references.

Fixes performance issue due to interaction of resetting QPDFValue::qpdf and
og members and prior code.

Use 'QPDFObjGen const&' instead of 'int, int' in signature.

Change method signatures to use QPDFObjGen.
Replace QPDF_Stream::objid and generation with QPDF_Stream::og.

Change method signatures to use QPDFObjGen.
Use QPDFObjGen methods where possible.
Remove redundant QPDF::objGenToIndirect.

Also, revert inlining of unparse and operator << from commit 4c6640c in
order to avoid exposing QUtil.

Move responsibility for creating shared pointers to objects and cloning from QPDFObjectHandle to QPDFObject.

These mean to leave the original values alone. This is needed for
reconstructing streams from JSON given that the stream data and stream
dictionary may appear in any order in the JSON.

I decided these were confusing and inconsistent with how JSON works.
They muddle the API rather than improving it.

Not fully exercised in this commit

Update getJSON() methods and calls to them

Change .clang-format and commit automated changes from a fresh run of
format-code

(patrepl and cleanpatch are my own utilities)

patrepl s/PointerHolder/std::shared_ptr/g {include,libqpdf}/qpdf/*.hh
patrepl s/PointerHolder/std::shared_ptr/g libqpdf/*.cc
patrepl s/make_pointer_holder/std::make_shared/g libqpdf/*.cc
patrepl s/make_array_pointer_holder/QUtil::make_shared_array/g libqpdf/*.cc
patrepl s,qpdf/std::shared_ptr,qpdf/PointerHolder, **/*.cc **/*.hh
git restore include/qpdf/PointerHolder.hh
cleanpatch
./format-code

Run this:

for i in  **/*.cc **/*.c **/*.h **/*.hh; do
  clang-format < $i >| $i.new && mv $i.new $i
done