OpenSystemsDevelopment / qpdf

Now --json-output just changes defaults. Allow output file with --json.

from "qpdf-v2" to "qpdf": [..., ...]

Add additional parameters that will be needed to call QPDF::writeJSON
in partial mode.

Use 'QPDFObjGen const&' instead of 'int, int' in signature.

Change method signatures to use QPDFObjGen.
Use QPDFObjGen methods where possible.
Remove redundant QPDF::objGenToIndirect.

Change method signature to use QPDFObjGen.

We need to know whether pushInheritedAttributesToPage or getAllPages
have been called when generating JSON output. When reading the JSON
back in, we have to call the same methods so that object numbers will
line up properly.

* Replace --create-from-json=file with --json-input, which causes the
  regular input to be treated as json.
* Eliminate --to-json
* In --json=2, bring back "objects" and eliminate "objectinfo". Stream
  data is never present.
* In --json-output=2, write "qpdf-v2" with "objects" and include
  stream data.

There are no automated tests yet, but committing work so far in
preparation for some refactoring.

Also add stubs for top-level QPDF methods (createFromJSON,
updateFromJSON)

* Merge overloaded functions by adding default values
* Remove non-const methods that are identical to const methods

(patrepl and cleanpatch are my own utilities)

patrepl s/PointerHolder/std::shared_ptr/g {include,libqpdf}/qpdf/*.hh
patrepl s/PointerHolder/std::shared_ptr/g libqpdf/*.cc
patrepl s/make_pointer_holder/std::make_shared/g libqpdf/*.cc
patrepl s/make_array_pointer_holder/QUtil::make_shared_array/g libqpdf/*.cc
patrepl s,qpdf/std::shared_ptr,qpdf/PointerHolder, **/*.cc **/*.hh
git restore include/qpdf/PointerHolder.hh
cleanpatch
./format-code

Run this:

for i in  **/*.cc **/*.c **/*.h **/*.hh; do
  clang-format < $i >| $i.new && mv $i.new $i
done

This comment expands all tabs using an 8-character tab-width. You
should ignore this commit when using git blame or use git blame -w.

In the early days, I used to use tabs where possible for indentation,
since emacs did this automatically. In recent years, I have switched
to only using spaces, which means qpdf source code has been a mixture
of spaces and tabs. I have avoided cleaning this up because of not
wanting gratuitous whitespaces change to cloud the output of git
blame, but I changed my mind after discussing with users who view qpdf
source code in editors/IDEs that have other tab widths by default and
in light of the fact that I am planning to start applying automatic
code formatting soon.

None of these are in the public API.

This was originally not public because I wanted to get rid fo the
pages cache, but I recently realized there were deep reasons not to do
that, and the author of pikepdf wanted this, so I decided to make it
public.

This results in a performance penalty of 1% to 2% when replaceObject
and swapObjects are never called and a somewhat larger penalty if they
are called, but it's worth it to avoid very confusing behavior as
discussed in depth in qpdf#507.