diff --git a/bin/system_info.php b/bin/system_info.php
index e9b39d0..c61ed8d 100644
--- a/bin/system_info.php
+++ b/bin/system_info.php
@@ -151,22 +151,28 @@ function getKTEdition()
 function getOSInfo()
 {
     $server = php_uname();
-    $flavour = '';//'|-';
+    $server_arr = explode(' ', $server);
+
+    // kernel version and os type - 32bit / 64bit
+    $kernel_v = $server_arr[2];
+    $os_v = array_pop($server_arr);
 
     if(strpos($server, 'Darwin') !== false){
         $os = 'Mac OS X';
     }else if(strpos($server, 'Win') !== false){
         $os = 'Windows';
+        // windows differs from *nix
+        // kernel version = windows version
+        // os version = build number
+        $kernel_v = $server_arr[3];
+        $os_v = array_pop($server_arr);
     }else if(strpos($server, 'Linux') !== false) {
-        // Again regular expressions would be nice...
-        // $pos = strpos($server, 'SMP');
-        // $flavour = '|'.substr($server, 6, $pos-7);
         $os = 'Linux';
     }else {
         $os = 'Unix';
     }
 
-    return $os.$flavour;
+    return $os.'|'.$kernel_v.'|'.$os_v;
 }
 
 function sendForm($data)
diff --git a/setup/upgrade/lib/UpgradeItems.inc.php b/setup/upgrade/lib/UpgradeItems.inc.php
index 4ed2cd5..561401c 100644
--- a/setup/upgrade/lib/UpgradeItems.inc.php
+++ b/setup/upgrade/lib/UpgradeItems.inc.php
@@ -49,19 +49,24 @@
  */
 // }}}
 
-//require_once(KT_LIB_DIR . '/upgrades/UpgradeFunctions.inc.php');
 require_once('sqlfile.inc.php');
-require_once('datetime.inc');
+require_once('datetime.inc.php');
+
+require_once("../wizard/iniUtilities.php");
+require_once("../wizard/dbUtilities.php");
 
 // {{{ Upgrade_Already_Applied
-class Upgrade_Already_Applied { //extends PEAR_Error {
+class Upgrade_Already_Applied {
+    
     function Upgrade_Already_Applied($oUpgradeItem) {
         $this->oUpgradeItem = $oUpgradeItem;
     }
+    
 }
 // }}}
 
-class UpgradeItem extends InstallUtil {
+class UpgradeItem {
+    
     var $type = "";
     var $name;
     var $version;
@@ -81,9 +86,9 @@ class UpgradeItem extends InstallUtil {
         $this->description = $description;
         $this->phase = $phase;
         $this->priority = $priority;
-        parent::__construct();
-//        print_r($this);
-//        die;
+        
+        $this->dbUtilities = new dbUtilities();
+		$this->iniUtilities = new iniUtilities();
     }
 
     function setParent($parent) {
@@ -117,41 +122,35 @@ class UpgradeItem extends InstallUtil {
         return $this->type;
     }
 
-    function runDBQuery($query, $checkResult = false, $typeCheck = false) {
-		require_once("../wizard/steps/configuration.php"); // configuration to read the ini path
+    /**
+     * Runs a DB query and returns a result based on arguments which specify what to look for
+     *
+     * @param string $query The query to run
+     * @param boolean $checkResult Whether to check that a result was found (not needed for update/delete, only select): This result may be empty
+     * @param boolean $resultCheck Whether to check for returned results from the query
+     * @return unknown
+     */
+    function runDBQuery($query, $checkResult = false, $resultCheck = false) {
+        if(!isset($this->iniUtilities) || !is_object($this->iniUtilities)) {
+			$this->dbUtilities = new dbUtilities();
+		    $this->iniUtilities = new iniUtilities();
+		}
+		
 		$wizConfigHandler = new configuration();
 		$configPath = $wizConfigHandler->readConfigPathIni();
-		if(!is_object($this->iniUtilities)) {
-			parent::__construct();
-		}
+		
 		$this->iniUtilities->load($configPath);
 		$dconf = $this->iniUtilities->getSection('db');
 		$this->dbUtilities->load($dconf['dbHost'], '', $dconf['dbUser'], $dconf['dbPass'], $dconf['dbName']);
         $result = $this->dbUtilities->query($query);
-//        echo "$query<br/>";
-//        echo '<pre>';
-//        print_r($result);
-//        echo '</pre>';
 		if($checkResult) {
         	$assArr = $this->dbUtilities->fetchAssoc($result);
-//	        echo '<pre>';
-//	        print_r($assArr);
-//	        echo '</pre>';
-//	        if(is_null($assArr)) {
-//	        	echo '=== null ===<br/>';
-//	        	return false;
-//	        } else {
-//	        	echo '=== not null ===<br/>';
-//	        }
-	        if($typeCheck) {
+	        if($resultCheck) {
 	        	return !is_null($assArr);
 	        } else {
 	        	return is_null($assArr);
 	        }
 		}
-//        echo '<pre>';
-//        print_r($assArr);
-//        echo '</pre>';
         return !is_null($result);
     }
     
@@ -185,14 +184,7 @@ class UpgradeItem extends InstallUtil {
                 return new Upgrade_Already_Applied($this);
             }
         }
-//        if (!$res) {
-//			$this->error[] = 'An Error Has Occured';
-//        }
-//        $oCache =& KTCache::getSingleton();
-//        $save = $oCache->bEnabled;
-//        $oCache->bEnabled = false;
         $res = $this->_performUpgrade();
-//        $oCache->bEnabled = $save;
         if (!$res) {
             $this->_recordUpgrade(false);
             $this->error[] = $this->dbUtilities->getErrors();
@@ -200,7 +192,7 @@ class UpgradeItem extends InstallUtil {
         }
         $res = $this->_recordUpgrade(true);
         if (!$res) {
-        	$this->error[] = 'An Error Has Occured 1';
+        	$this->error[] = 'An Error Has Occured';
 			return false;
         }
         return true;
@@ -220,21 +212,20 @@ class UpgradeItem extends InstallUtil {
         } else {
             $parentid = null;
         }
-		$sql = "INSERT INTO upgrades (`id`, `descriptor`, `description`, `date_performed`, `result`, `parent`) VALUES ('', '". $this->getDescriptor()."', '".$this->description."', '".$this->date."', '".$result."', '".$parentid."')";
+		$sql = "INSERT INTO upgrades (`id`, `descriptor`, `description`, `date_performed`, `result`, `parent`) VALUES (NULL, '". $this->getDescriptor()."', '".$this->description."', '".$this->date."', '".$result."', '".$parentid."')";
 		$this->dbUtilities->query($sql);
 		
 		return true;
     }
 
-    // STATIC
     function getAllUpgrades() {
         return array();
     }
-    
 
-}
+} // end class UpgradeItem
 
 class SQLUpgradeItem extends UpgradeItem {
+    
     function SQLUpgradeItem($path, $version = null, $description = null, $phase = null, $priority = null) {
         $this->type = "sql";
         $this->priority = 0;
@@ -270,18 +261,15 @@ class SQLUpgradeItem extends UpgradeItem {
      * STATIC
      */
     public static function getUpgrades($origVersion, $currVersion) {
-//        global $default;
-		
-//        $sqlupgradedir = KT_DIR . '/sql/' . $default->dbType . '/upgrade/';
-			$dbType = 'mysql';
-			$sqlupgradedir = KT_DIR . 'sql/' . $dbType . '/upgrade/';
+		$dbType = 'mysql';
+		$sqlupgradedir = KT_DIR . 'sql/' . $dbType . '/upgrade/';
         $ret = array();
 
         if (!is_dir($sqlupgradedir)) {
-//            return PEAR::raiseError("SQL Upgrade directory ($sqlupgradedir) not accessible");
+            return false;
         }
         if (!($dh = opendir($sqlupgradedir))) {
-//            return PEAR::raiseError("SQL Upgrade directory ($sqlupgradedir) not accessible");
+            return false;
         }
 
         while (($file = readdir($dh)) !== false) {
@@ -309,9 +297,6 @@ class SQLUpgradeItem extends UpgradeItem {
                     if (!lte_version($details[1], $currVersion)) {
                         continue;
                     }
-                    //print "Will run $file\n";
-//                    print_r($this->util->dbUtilities);
-//                    die;
                     $ret[] = new SQLUpgradeItem($file);
                 }
             }
@@ -330,10 +315,6 @@ class SQLUpgradeItem extends UpgradeItem {
                         if (!lte_version($details[1], $currVersion)) {
                             continue;
                         }
-                        //print "Will run $file\n";
-//                        print_r(SQLUpgradeItem::);
-//                        die;
-//						new InstallUtil();
                         $ret[] = new SQLUpgradeItem($relpath);
                     }
                 }
@@ -384,10 +365,10 @@ class SQLUpgradeItem extends UpgradeItem {
         return $this->dbUtilities->runQueries($queries);
     }
     
-
-}
+} // end class SQLUpgradeItem
 
 class KTRebuildPermissionObserver {
+    
     function start() {
         $this->lastBeat = time();
     }
@@ -401,9 +382,11 @@ class KTRebuildPermissionObserver {
     }
     function end() {
     }
+    
 }
 
 class RecordUpgradeItem extends UpgradeItem {
+    
     function RecordUpgradeItem ($version, $oldversion = null) {
         $this->type = "upgrade";
         if (is_null($oldversion)) {
@@ -417,24 +400,30 @@ class RecordUpgradeItem extends UpgradeItem {
     }
 
     function _performUpgrade() {
-//        $this->_deleteSmartyFiles();
-//        $this->_deleteProxyFiles();
-//        require_once(KT_LIB_DIR . '/cache/cache.inc.php');
-//        $oCache =& KTCache::getSingleton();
-//        $oCache->deleteAllCaches();
+        // What did this do?
+        /*
+        $this->_deleteSmartyFiles();
+        $this->_deleteProxyFiles();
+        require_once(KT_LIB_DIR . '/cache/cache.inc.php');
+        $oCache =& KTCache::getSingleton();
+        $oCache->deleteAllCaches();
 		// TODO : clear cache folder
-//        require_once(KT_LIB_DIR .  '/permissions/permissionutil.inc.php');
-		// TODO : What does this do
-//        $po =& new KTRebuildPermissionObserver($this);
-//        $po->start();
-//        $oChannel =& KTPermissionChannel::getSingleton();
-//        $oChannel->addObserver($po);
+        require_once(KT_LIB_DIR .  '/permissions/permissionutil.inc.php');
+		 TODO : What does this do
+        $po =& new KTRebuildPermissionObserver($this);
+        $po->start();
+        $oChannel =& KTPermissionChannel::getSingleton();
+        $oChannel->addObserver($po);
+        */
 
         set_time_limit(0);
         ignore_user_abort(true);
 
-//        KTPermissionUtil::rebuildPermissionLookups(true);
-//        $po->end();
+        // What did this do?
+        /*
+        KTPermissionUtil::rebuildPermissionLookups(true);
+        $po->end();
+        */
 		
         $versionFile=KT_DIR . '/docs/VERSION-NAME.txt';
         $fp = fopen($versionFile,'rt');
@@ -470,7 +459,6 @@ class RecordUpgradeItem extends UpgradeItem {
         }
     }
 
-
     function _deleteProxyFiles() {
         $oKTConfig =& KTConfig::getSingleton();
 
@@ -505,6 +493,7 @@ class RecordUpgradeItem extends UpgradeItem {
             @unlink($sFile);
         }
     }
-}
+    
+} // end class RecordUpgradeItem
 
 ?>
diff --git a/setup/upgrade/lib/datetime.inc b/setup/upgrade/lib/datetime.inc.php
index 6bcffd2..6bcffd2 100644
--- a/setup/upgrade/lib/datetime.inc
+++ b/setup/upgrade/lib/datetime.inc.php
diff --git a/setup/upgrade/lib/upgrade.inc.php b/setup/upgrade/lib/upgrade.inc.php
index c3dcd18..2fa9a9a 100644
--- a/setup/upgrade/lib/upgrade.inc.php
+++ b/setup/upgrade/lib/upgrade.inc.php
@@ -40,31 +40,34 @@
 
 require_once('UpgradeItems.inc.php');
 
-//function setupAdminDatabase() {
-//    global $default;
-//    $dsn = array(
-//        'phptype'  => $default->dbType,
-//        'username' => $default->dbAdminUser,
-//        'password' => $default->dbAdminPass,
-//        'hostspec' => $default->dbHost,
-//        'database' => $default->dbName,
-//        'port' => $default->dbPort,
-//    );
-//
-//    $options = array(
-//        'debug'       => 2,
-//        'portability' => DB_PORTABILITY_ERRORS,
-//        'seqname_format' => 'zseq_%s',
-//    );
-//
-//    $default->_admindb = &DB::connect($dsn, $options);
-//    if (PEAR::isError($default->_admindb)) {
-//        die($default->_admindb->toString());
-//    }
-//    $default->_admindb->setFetchMode(DB_FETCHMODE_ASSOC);
-//    return;
-//}
-//setupAdminDatabase();
+// What did this do?
+/*
+function setupAdminDatabase() {
+    global $default;
+    $dsn = array(
+        'phptype'  => $default->dbType,
+        'username' => $default->dbAdminUser,
+        'password' => $default->dbAdminPass,
+        'hostspec' => $default->dbHost,
+        'database' => $default->dbName,
+        'port' => $default->dbPort,
+    );
+
+    $options = array(
+        'debug'       => 2,
+        'portability' => DB_PORTABILITY_ERRORS,
+        'seqname_format' => 'zseq_%s',
+    );
+
+    $default->_admindb = &DB::connect($dsn, $options);
+    if (PEAR::isError($default->_admindb)) {
+        die($default->_admindb->toString());
+    }
+    $default->_admindb->setFetchMode(DB_FETCHMODE_ASSOC);
+    return;
+}
+setupAdminDatabase();
+*/
 
 // {{{ Format of the descriptor
 /**
@@ -196,7 +199,7 @@ function compare_version($version1, $version2) {
  */
 function lte_version($version1, $version2) {
     if (in_array(compare_version($version1, $version2), array(-1, 0))) {
-            return true;
+        return true;
     }
     return false;
 }
@@ -208,7 +211,7 @@ function lte_version($version1, $version2) {
  */
 function gte_version($version1, $version2) {
     if (in_array(compare_version($version1, $version2), array(0, 1))) {
-            return true;
+        return true;
     }
     return false;
 }
diff --git a/setup/upgrade/step.php b/setup/upgrade/step.php
index 2cf5254..355fabe 100644
--- a/setup/upgrade/step.php
+++ b/setup/upgrade/step.php
@@ -39,6 +39,9 @@
 * @package Upgrader
 * @version Version 0.1
 */
+
+require_once("../wizard/steps/configuration.php"); // configuration to read the ini path
+
 class Step
 {
 	/**
@@ -435,6 +438,44 @@ class Step
     	
     	return $_SESSION[$package][$class];
     }
+    
+    protected function readConfig() {
+    	$wizConfigHandler = new configuration();
+    	$path = $wizConfigHandler->readConfigPathIni();
+		$this->util->iniUtilities->load($path);
+        $dbSettings = $this->util->iniUtilities->getSection('db');
+        $this->dbSettings = array('dbHost'=> $dbSettings['dbHost'],
+                                  'dbName'=> $dbSettings['dbName'],
+                                  'dbUser'=> $dbSettings['dbUser'],
+                                  'dbPass'=> $dbSettings['dbPass'],
+                                  'dbPort'=> $dbSettings['dbPort'],
+                                  'dbAdminUser'=> $dbSettings['dbAdminUser'],
+                                  'dbAdminPass'=> $dbSettings['dbAdminPass'],
+        );
+        $this->paths = $this->util->iniUtilities->getSection('urls');
+        $this->paths = array_merge($this->paths, $this->util->iniUtilities->getSection('cache'));
+        $this->sysVersion = $this->readVersion();
+        $this->cachePath = $wizConfigHandler->readCachePath();
+        $this->proxyPath = $this->cachePath."/.."; // Total guess.
+        $this->proxyPath = realpath($this->proxyPath."/proxies");
+        $this->storeSilent();
+    }
+    
+    protected function readVersion() {
+    	$verFile = SYSTEM_DIR."docs".DS."VERSION.txt";
+    	if(file_exists($verFile)) {
+			$foundVersion = file_get_contents($verFile);
+			return $foundVersion;
+    	} else {
+			$this->error[] = "KT installation version not found";
+    	}
+
+		return false;    	
+    }
+    
+    protected function storeSilent() {
+        
+    }
 }
 
 ?>
\ No newline at end of file
diff --git a/setup/upgrade/steps/upgradeBackup.php b/setup/upgrade/steps/upgradeBackup.php
index fa91eff..51f28d8 100644
--- a/setup/upgrade/steps/upgradeBackup.php
+++ b/setup/upgrade/steps/upgradeBackup.php
@@ -101,7 +101,6 @@ class upgradeBackup extends Step {
             // TODO error checking (done in backupDone at the moment)
             $this->backupDone();
         }
-//        $this->storeSilent();// Set silent mode variables
         
         return true;
     }
@@ -246,43 +245,6 @@ class upgradeBackup extends Step {
         $this->temp_variables['dir'] = $dir;
         $this->temp_variables['display'] = $stmt['display'];
     }
-    
-    // TODO this function needs to be refactored out into the parent Step class??
-    private function readConfig() {
-		require_once("../wizard/steps/configuration.php"); // configuration to read the ini path
-    	$wizConfigHandler = new configuration();
-    	$path = $wizConfigHandler->readConfigPathIni();
-		$this->util->iniUtilities->load($path);
-        $dbSettings = $this->util->iniUtilities->getSection('db');
-        
-        $this->dbSettings = array('dbHost'=> $dbSettings['dbHost'],
-                                    'dbName'=> $dbSettings['dbName'],
-                                    'dbUser'=> $dbSettings['dbUser'],
-                                    'dbPass'=> $dbSettings['dbPass'],
-                                    'dbPort'=> $dbSettings['dbPort'],
-                                    // dbSocket doesn't exist as far as I can find, where was it coming from?
-                                    //'dbSocket'=> $dbSettings['dbSocket'],
-                                    'dbAdminUser'=> $dbSettings['dbAdminUser'],
-                                    'dbAdminPass'=> $dbSettings['dbAdminPass'],
-        );
-        $this->paths = $this->util->iniUtilities->getSection('urls');
-        $this->paths = array_merge($this->paths, $this->util->iniUtilities->getSection('cache'));
-        $this->temp_variables['dbSettings'] = $this->dbSettings;
-        $this->sysVersion = $this->readVersion();
-        $this->cachePath = $wizConfigHandler->readCachePath();
-    }
-    
-    // TODO this function needs to be refactored out into the parent Step class
-    public function readVersion() {
-    	$verFile = SYSTEM_DIR."docs".DS."VERSION.txt";
-    	if(file_exists($verFile)) {
-			$foundVersion = file_get_contents($verFile);
-			return $foundVersion;
-    	} else {
-			$this->error[] = "KT installation version not found";
-    	}
 
-		return false;    	
-    }
 }
 ?>
\ No newline at end of file
diff --git a/setup/upgrade/steps/upgradeComplete.php b/setup/upgrade/steps/upgradeComplete.php
index 11f48d8..efa0ef9 100644
--- a/setup/upgrade/steps/upgradeComplete.php
+++ b/setup/upgrade/steps/upgradeComplete.php
@@ -61,7 +61,7 @@ class upgradeComplete extends Step {
      * Set all silent mode varibles
      *
      */
-    private function storeSilent() {
+    protected function storeSilent() {
     	$v = $this->getDataFromSession('upgradeProperties');
     	$this->temp_variables['sysVersion'] = $v['upgrade_version'];
     }
diff --git a/setup/upgrade/steps/upgradeDatabase.php b/setup/upgrade/steps/upgradeDatabase.php
index ef5d3fd..c3360c7 100644
--- a/setup/upgrade/steps/upgradeDatabase.php
+++ b/setup/upgrade/steps/upgradeDatabase.php
@@ -65,15 +65,6 @@ class upgradeDatabase extends Step
     private $dbBinary = ''; // TODO:multiple databases
     
 	/**
-	* List of errors encountered
-	*
-	* @author KnowledgeTree Team
-	* @access public
-	* @var array
-	*/
-    public $error = array();
-    
-	/**
 	* List of errors used in template
 	*
 	* @author KnowledgeTree Team
@@ -143,8 +134,10 @@ class upgradeDatabase extends Step
     
     private function doRun($action = null) {
         $this->readConfig();
+        
 		$con = $this->util->dbUtilities->load($this->dbSettings['dbHost'], $this->dbSettings['dbPort'], $this->dbSettings['dbUser'],$this->dbSettings['dbPass'], $this->dbSettings['dbName']);
         $this->temp_variables['action'] = $action;
+        
         if (is_null($action) || ($action == 'preview')) {
             $this->temp_variables['title'] = 'Preview Upgrade';
             $this->temp_variables['upgradeTable'] = $this->generateUpgradeTable();
@@ -206,31 +199,6 @@ class upgradeDatabase extends Step
 
 		return false;    	
     }
-    
-	/**
-	* Stores varibles used by template
-	*
-	* @author KnowledgeTree Team
-	* @params none
-	* @access public
-	* @return array
-	*/
-    public function getStepVars() {
-        return $this->temp_variables;
-    }
-
-	/**
-	* Returns database errors
-	*
-	* @author KnowledgeTree Team
-	* @access public
-	* @params none
-	* @return array
-	*/
-    public function getErrors() {
-
-        return $this->error;
-    }
 
 	/**
 	* Initialize errors to false
@@ -246,29 +214,6 @@ class upgradeDatabase extends Step
     	}
     }
     
-     private function readConfig() {
-			require_once("../wizard/steps/configuration.php"); // configuration to read the ini path
-    		$wizConfigHandler = new configuration();
-    		$path = $wizConfigHandler->readConfigPathIni();
-			$this->util->iniUtilities->load($path);
-        	$dbSettings = $this->util->iniUtilities->getSection('db');
-        	$this->dbSettings = array('dbHost'=> $dbSettings['dbHost'],
-                                    'dbName'=> $dbSettings['dbName'],
-                                    'dbUser'=> $dbSettings['dbUser'],
-                                    'dbPass'=> $dbSettings['dbPass'],
-                                    'dbPort'=> $dbSettings['dbPort'],
-                                    'dbAdminUser'=> $dbSettings['dbAdminUser'],
-                                    'dbAdminPass'=> $dbSettings['dbAdminPass'],
-        	);
-        	$this->paths = $this->util->iniUtilities->getSection('urls');
-        	$this->paths = array_merge($this->paths, $this->util->iniUtilities->getSection('cache'));
-        	$this->sysVersion = $this->readVersion();
-        	$this->cachePath = $wizConfigHandler->readCachePath();
-        	$this->proxyPath = $this->cachePath."/.."; // Total guess.
-        	$this->proxyPath = realpath($this->proxyPath."/proxies");
-        	$this->storeSilent();
-    }
-    
     public function storeSilent() {
     	$this->temp_variables['paths'] = $this->paths;
     	$this->temp_variables['sysVersion'] = $this->sysVersion;
@@ -329,6 +274,8 @@ class upgradeDatabase extends Step
     }
     
     private function deleteDirectory($sPath) {
+        if (empty($sPath) || !is_dir($sPath)) return;
+        
         if (!WINDOWS_OS) {
             if (file_exists('/bin/rm')) {
                 $this->util->pexec(array('/bin/rm', '-rf', $sPath));
@@ -364,17 +311,11 @@ class upgradeDatabase extends Step
     
         // Ensure all plugins are re-registered.
         $sql = "TRUNCATE plugin_helper";
-        //$res = DBUtil::runQuery($sql);
     	$res = $this->util->dbUtilities->query($sql);
     	
         // Clear out all caches and proxies - they need to be regenerated with the new code
         $this->deleteDirectory($this->proxyPath);
-//        $oKTCache = new KTCache();
-//        $oKTCache->deleteAllCaches();
     	$this->deleteDirectory($this->cachePath);
-        // Clear the configuration cache, it'll regenerate on next load
-//        $oKTConfig = new KTConfig();
-//        $oKTConfig->clearCache();
     
         // Unlock the scheduler
         $lockFile = $this->cachePath . DIRECTORY_SEPARATOR . 'scheduler.lock';
@@ -409,17 +350,8 @@ class upgradeDatabase extends Step
             $this->temp_variables['upgradeTable'] .= sprintf('<div class="bar">%s</div>', $this->showResult($res));
             $this->temp_variables['upgradeTable'] .= '<br>' . "\n";
             $this->temp_variables['upgradeTable'] .= "</div>\n";
-//            if (!$res) {
-//                if (!is_a($res, 'Upgrade_Already_Applied')) {
-//                    $res = false;
-//                } else {
-//                    $res = true;
-//                }
-//            }
             if ($res === false) {
-            	die;
                 $this->error = $this->util->dbUtilities->getErrors();
-//                print_r($this->error);
                 break;
             }
         }
@@ -428,11 +360,8 @@ class upgradeDatabase extends Step
     }
     
     private function showResult($res) {
-        if ($res) {
-            if (is_a($res, 'Upgrade_Already_Applied')) {
-                return '<span style="color: orange">Already applied</span>';
-            }
-//            return sprintf('<span style="color: red">%s</span>', htmlspecialchars($res));
+        if ($res && is_a($res, 'Upgrade_Already_Applied')) {
+            return '<span style="color: orange">Already applied</span>';
         }
         if ($res === true) {
             return '<span style="color: green">Success</span>';
diff --git a/setup/upgrade/steps/upgradeRestore.php b/setup/upgrade/steps/upgradeRestore.php
index b6fedd6..1cdc480 100644
--- a/setup/upgrade/steps/upgradeRestore.php
+++ b/setup/upgrade/steps/upgradeRestore.php
@@ -94,8 +94,6 @@ class upgradeRestore extends Step {
             $this->restoreDatabase();
         }
             
-//        $this->storeSilent();// Set silent mode variables
-        
         return true;
     }
     
@@ -223,43 +221,5 @@ class upgradeRestore extends Step {
         $this->temp_variables['selected'] = true;
     }
     
-    // TODO this function needs to be refactored out into the parent Step class??
-    private function readConfig() {
-		require_once("../wizard/steps/configuration.php"); // configuration to read the ini path
-    	$wizConfigHandler = new configuration();
-    	$path = $wizConfigHandler->readConfigPathIni();
-		$this->util->iniUtilities->load($path);
-        $dbSettings = $this->util->iniUtilities->getSection('db');
-        
-        $this->dbSettings = array('dbHost'=> $dbSettings['dbHost'],
-                                    'dbName'=> $dbSettings['dbName'],
-                                    'dbUser'=> $dbSettings['dbUser'],
-                                    'dbPass'=> $dbSettings['dbPass'],
-                                    'dbPort'=> $dbSettings['dbPort'],
-                                    // dbSocket doesn't exist as far as I can find, where was it coming from?
-                                    //'dbSocket'=> $dbSettings['dbSocket'],
-                                    'dbAdminUser'=> $dbSettings['dbAdminUser'],
-                                    'dbAdminPass'=> $dbSettings['dbAdminPass'],
-        );
-        $this->paths = $this->util->iniUtilities->getSection('urls');
-        $this->paths = array_merge($this->paths, $this->util->iniUtilities->getSection('cache'));
-        $this->temp_variables['dbSettings'] = $this->dbSettings;
-        $this->sysVersion = $this->readVersion();
-        $this->cachePath = $wizConfigHandler->readCachePath();
-    }
-    
-    // TODO this function needs to be refactored out into the parent Step class
-    public function readVersion() {
-    	$verFile = SYSTEM_DIR."docs".DS."VERSION.txt";
-    	if(file_exists($verFile)) {
-			$foundVersion = file_get_contents($verFile);
-			return $foundVersion;
-    	} else {
-			$this->error[] = "KT installation version not found";
-    	}
-
-		return false;    	
-    }
-
 }
 ?>
\ No newline at end of file
diff --git a/setup/upgrade/templates/database.tpl b/setup/upgrade/templates/database.tpl
index 4fb564b..8f78772 100644
--- a/setup/upgrade/templates/database.tpl
+++ b/setup/upgrade/templates/database.tpl
@@ -20,13 +20,11 @@
             <?php echo $upgradeTable; ?>
             <?php }
             else if ($action == 'confirm') {
-                if (!$backupStatus) { ?>
+                if ($backupStatus) { ?>
                     <p>We are about to start the upgrade process.<P>
                 <?php }
                 else { ?>
-                <br/>
-                <font color="Red">Please ensure that you have made a backup before continuing with the upgrade process.</font>
-                <p>
+                    <p><font color="Red">Please ensure that you have made a backup before continuing with the upgrade process.</font><p>
                 <?php } ?>
             <?php }
             else if ($action == 'runUpgrade') {
diff --git a/setup/wizard/steps/complete.php b/setup/wizard/steps/complete.php
index 8df2aae..d32a648 100644
--- a/setup/wizard/steps/complete.php
+++ b/setup/wizard/steps/complete.php
@@ -96,6 +96,7 @@ class complete extends Step {
 	        foreach ($paths as $path)
 	        {
 	            $output = '';
+	            $path['path'] = $class = strtolower(substr($path['path'],0,1)).substr($path['path'],1); // Damn you windows
 	            $result = $this->util->checkPermission($path['path']);
             	$output = sprintf($pathhtml, $result['class'], $path['path'], 
                                      (($result['class'] == 'tick') ? 'class="green"' : 'class="error"' ), 
diff --git a/setup/wizard/steps/configuration.php b/setup/wizard/steps/configuration.php
index 7024af7..bdfca7d 100644
--- a/setup/wizard/steps/configuration.php
+++ b/setup/wizard/steps/configuration.php
@@ -450,7 +450,7 @@ class configuration extends Step
         	}
 			$dirs = $this->getFromConfigPath(); // Store contents
         }
-        $varDirectory = $fileSystemRoot . DS . 'var';
+        
         foreach ($dirs as $key => $dir){
             $path = (isset($_POST[$dir['setting']])) ? $_POST[$dir['setting']] : $dir['path'];
 
@@ -460,6 +460,7 @@ class configuration extends Step
 			if(WINDOWS_OS)
             	$path = preg_replace('/\//', '\\',$path);
             	$dirs[$key]['path'] = $path;
+            	$path = $class = strtolower(substr($path,0,1)).substr($path,1); // Damn you windows
             	if(isset($dir['file']))
             		$class = $this->util->checkPermission($path, $dir['create'], true);
             	else 
diff --git a/setup/wizard/steps/services.php b/setup/wizard/steps/services.php
index 6f5d309..153796d 100644
--- a/setup/wizard/steps/services.php
+++ b/setup/wizard/steps/services.php
@@ -219,7 +219,7 @@ class services extends Step
 				$srv = new $className();
 				$srv->load();
 				$status = $this->serviceInstalled($srv);
-				if($status != 'STARTED') {
+				if($status != 'STARTED' || $status != 'STOPPED') {
 					if(!WINDOWS_OS) { $binary = $this->$class->getBinary(); } // Get binary, if it exists
 					$passed = $this->$class->binaryChecks(); // Run Binary Pre Checks
 	    			if ($passed) { // Install Service